Research Articles

Peer-reviewed

Frémont, P. et al. 2025. Changes in gene expression in eukaryotic phytoplankton at the Atlantic-Arctic polar front. Microbiome. In press. doi:10.1186/s40168-026-02574-8 

Frémont, P., et al. 2026. Coexistence of Photosynthetic Marine Microorganisms, Viruses and Grazers: Towards Integration in Ocean Ecosystem Models. Environmental Microbiology. 28, no. 4: e70295. doi:10.1111/1462-2920.70295.

Mestrallet, G. et al. 2026. Epigenetic profile drives accurate survival prediction in breast cancer via a multi-omics machine learning model. Peer Community In. doi:10.24072/pcjournal.758.

Dey, R. et al. 2026. Microbial Primer: Bayesian learning of traits from microbial time series data. Microbiology. 172:001739. https://doi.org/10.1099/mic.0.001739.

Rigonato, J. et al. 2023. Ocean-wide comparisons of mesopelagic planktonic community structures. ISME Communications. 3, 83. doi:10.1038/s43705-023-00279-9.

Frémont, P. et al. 2022. Restructuring of plankton genomic biogeography in the surface ocean under climate change. Nature Climate Change. doi: 10.1038/s41558-022-01314-8.

Richter, D. J. et al. 2022. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. eLife. 11:e78129. doi:10.1101/867739.

Delmont, T. O. et al. 2022. Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics. Cell Genomics. doi: 10.1016/j.xgen.2022.100123 (see associated website: Plankton website).

Guérin, N. et al. 2022. Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence. Communications Biology. 5, 983. doi: 10.1038/s42003-022-03939-z.

Busseni, G. et al. 2020. Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean. Global Ecology and Biogeography. doi:10.1111/geb.13161.

Junier, I. et al. 2018. Universal and idiosyncratic characteristic lengths in bacterial genomes. Physical Biology. 15, 15(3):035001. doi:10.1088/1478-3975/aab4ac.

Preprints

Frémont, P. et al. 2026. Particle-based representation of phytoplankton modulates emergent coexistence and biogeography in a model ocean. bioRxiv. doi:10.64898/2026.10.30.763182.

Arani et al. 2026. Slower-than-exponential viral decay is prevalent and can reshape virus-microbe dynamics. bioRxiv. doi:10.64898/2026.08.27.747580. In review.

Frémont, P. et al. 2026. Viral impacts on plankton standing stocks, primary productivity, and biogeochemistry in a model ocean. bioRxiv. doi:10.64898/2026.05.27.728272. In revision.

Talmy et al. 2026. Implicit representation of viruses fails to capture impacts of virus-induced mortality in global marine ecosystem models. bioRxiv. doi:10.64898/2026.07.21.739416. In revision.

Frémont, P. et al. 2025. Changes in gene expression in eukaryotic phytoplankton at the Atlantic-Arctic polar front. bioRxiv. doi:10.1101/2022.11.01.514737.

In preparation

Frémont, P. et al. Global and regional virally induced phytoplankton mortality in an ocean model.

Frémont, P. et al. The potential of viruses to promote coexistence in marine ecosystem models.