Research Articles

Peer-reviewed

Frémont, P., et al. 2026. Coexistence of Photosynthetic Marine Microorganisms, Viruses and Grazers: Towards Integration in Ocean Ecosystem Models. Environmental Microbiology. 28, no. 4: e70295. doi:10.1111/1462-2920.70295.

Mestrallet, G. et al. 2026. Epigenetic profile drives accurate survival prediction in breast cancer via a multi-omics machine learning model. Peer Community In. doi:10.24072/pcjournal.758.

Dey, R. et al. 2026. Microbial Primer: Bayesian learning of traits from microbial time series data. Microbiology. 172:001739. https://doi.org/10.1099/mic.0.001739.

Rigonato, J. et al. 2023. Ocean-wide comparisons of mesopelagic planktonic community structures. ISME Communications. 3, 83. doi:10.1038/s43705-023-00279-9.

Frémont, P. et al. 2022. Restructuring of plankton genomic biogeography in the surface ocean under climate change. Nature Climate Change. doi: 10.1038/s41558-022-01314-8.

Richter, D. J. et al. 2022. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. eLife. 11:e78129. doi:10.1101/867739.

Delmont, T. O. et al. 2022. Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics. Cell Genomics. doi: 10.1016/j.xgen.2022.100123 (see associated website: Plankton website).

Guérin, N. et al. 2022. Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence. Communications Biology. 5, 983. doi: 10.1038/s42003-022-03939-z.

Busseni, G. et al. 2020. Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean. Global Ecology and Biogeography. doi:10.1111/geb.13161.

Junier, I. et al. 2018. Universal and idiosyncratic characteristic lengths in bacterial genomes. Physical Biology. 15, 15(3):035001. doi:10.1088/1478-3975/aab4ac.

Preprints

Frémont, P. et al. 2026. Viral impacts on plankton standing stocks, primary productivity, and biogeochemistry in a model ocean. bioRxiv. doi:10.64898/2026.05.27.728272.

Talmy et al. 2026. Implicit representation of viruses fails to capture impacts of virus-induced mortality in global marine ecosystem models. bioRxiv. doi:10.64898/2026.07.21.739416.

Frémont, P. et al. 2025. Changes in gene expression in eukaryotic phytoplankton at the Atlantic-Arctic polar front. bioRxiv. doi: 10.1101/2022.11.01.514737.